44.
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Hyperosmotic stress memory in Arabidopsis is mediated by distinct epigenetically labile sites in the genome and is restricted in the male germline by DNA glycosylase activity
Wibowo A., Becker C., Marconi G., Durr J., Price J., Hagmann J., Papareddy R., Putra H., Kageyama J., Becker J., Weigel D. and Gutierrez-Marcos J.
Elife
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43.
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Epigenome confrontation triggers immediate reprogramming of DNA methylation and transposon silencing in Arabidopsis thaliana F1 epihybrids
Rigal M., Becker C., Pelissier T., Pogorelcnik R., Devos J., Ikeda Y., Weigel D. and Mathieu O.
Proc Natl Acad Sci U S A
(2016),
113(14) 2083-92.

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42.
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Cooperation and Conflict in the Plant Immune System
Chae E., Tran D. T. and Weigel D.
PLoS Pathog
(2016),
12(3) e1005452.

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41.
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Population Genomics for Understanding Adaptation in Wild Plant Species
Weigel D. and Nordborg M.
Annu Rev Genet
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49 315-38.
 
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40.
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Plants Release Precursors of Histone Deacetylase Inhibitors to Suppress Growth of Competitors
Venturelli S., Belz R. G., Kamper A., Berger A., von Horn K., Wegner A., Bocker A., Zabulon G., Langenecker T., Kohlbacher O., Barneche F., Weigel D., Lauer U. M., Bitzer M. and Becker C.
Plant Cell
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27(11) 3175-89.

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39.
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KH domain protein RCF3 is a tissue-biased regulator of the plant miRNA biogenesis cofactor HYL1
Karlsson P., Christie M. D., Seymour D. K., Wang H., Wang X., Hagmann J., Kulcheski F. and Manavella P. A.
Proc Natl Acad Sci U S A
(2015),
112(45) 14096-101.

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38.
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Adenylate cyclase 5 is required for melanophore and male pattern development in the guppy (Poecilia reticulata)
Kottler V. A., Kunstner A., Koch I., Flotenmeyer M., Langenecker T., Hoffmann M., Sharma E., Weigel D. and Dreyer C.
Pigment Cell Melanoma Res
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28(5) 545-558.

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37.
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THO2, a core member of the THO/TREX complex, is required for microRNA production in Arabidopsis
Francisco-Mangilet A. G., Karlsson P., Kim M. H., Eo H. J., Oh S. A., Kim J. H., Kulcheski F. R., Park S. K. and Manavella P. A.
Plant J
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82(6) 1018-29.

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36.
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Beyond the thale: comparative genomics and genetics of Arabidopsis relatives
Koenig D. and Weigel D.
Nat Rev Genet
(2015),
16(5) 285-98.

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35.
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Century-scale methylome stability in a recently diverged Arabidopsis thaliana lineage
Hagmann J., Becker C., Muller J., Stegle O., Meyer R. C., Wang G., Schneeberger K., Fitz J., Altmann T., Bergelson J., Borgwardt K. and Weigel D.
PLoS Genet
(2015),
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34.
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Population genomics of natural and experimental populations of guppies (Poecilia reticulata)
Fraser B. A., Kunstner A., Reznick D. N., Dreyer C. and Weigel D.
Mol Ecol
(2015),
24(2) 389-408.

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33.
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Rapid divergence and high diversity of miRNAs and miRNA targets in the Camelineae
Smith L. M., Burbano H. A., Wang X., Fitz J., Wang G., Ural-Blimke Y. and Weigel D.
Plant J
(2015),
81(4) 597-610.

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32.
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Plant Genetic Archaeology: Whole-Genome Sequencing Reveals the Pedigree of a Classical Trisomic Line
Salome P. A. and Weigel D.
G3 (Bethesda)
(2014),
5(2) 253-9.

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31.
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Recent geographic convergence in diurnal and annual temperature cycling flattens global thermal profiles
Wang G. and Dillon M. E.
Nature Clim. Change
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4(11) 988-992.

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30.
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Evolution of DNA methylation patterns in the Brassicaceae is driven by differences in genome organization
Seymour D. K., Koenig D., Hagmann J., Becker C. and Weigel D.
PLoS Genet
(2014),
10(11) e1004785.

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29.
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Multiple pigment cell types contribute to the black, blue, and orange ornaments of male guppies (Poecilia reticulata)
Kottler V. A., Koch I., Flotenmeyer M., Hashimoto H., Weigel D. and Dreyer C.
PLoS One
(2014),
9(1) e85647.

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28.
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Transcriptome assemblies for studying sex-biased gene expression in the guppy, Poecilia reticulata
Sharma E., Kunstner A., Fraser B. A., Zipprich G., Kottler V. A., Henz S. R., Weigel D. and Dreyer C.
BMC Genomics
(2014),
15 400.

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27.
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Pigment pattern formation in the guppy, Poecilia reticulata, involves the Kita and Csf1ra receptor tyrosine kinases
Kottler V. A., Fadeev A., Weigel D. and Dreyer C.
Genetics
(2013),
194(3) 631-46.

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26.
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The Capsella rubella genome and the genomic consequences of rapid mating system evolution
Slotte T., Hazzouri K. M., Agren J. A., Koenig D., Maumus F., Guo Y. L., Steige K., Platts A. E., Escobar J. S., Newman L. K., Wang W., Mandáková T., Vello E., Smith L. M., Henz S. R., Steffen J., Takuno S., Brandvain Y., Coop G., Andolfatto P., Hu T. T., Blanchette M., Clark R. M., Quesneville H., Nordborg M., Gaut B. S., Lysak M. A., Jenkins J., Grimwood J., Chapman J., Prochnik S., Shu S., Rokhsar D., Schmutz J., Weigel D. and Wright S. I.
Nat Genet
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45(7) 831-5.

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25.
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Transposon variants and their effects on gene expression in Arabidopsis
Wang X., Weigel D. and Smith L. M.
PLoS Genet
(2013),
9(2) e1003255.

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24.
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Estimates of genetic differentiation measured by F(ST) do not necessarily require large sample sizes when using many SNP markers
Willing E. M., Dreyer C. and van Oosterhout C.
PLoS One
(2012),
7(8) e42649.

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23.
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Independent FLC mutations as causes of flowering-time variation in Arabidopsis thaliana and Capsella rubella
Guo Y. L., Todesco M., Hagmann J., Das S. and Weigel D.
Genetics
(2012),
192(2) 729-39.

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22.
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Natural variation in Arabidopsis: from molecular genetics to ecological genomics
Weigel D.
Plant Physiol
(2012),
158(1) 2-22.

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21.
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Natural variation in biogenesis efficiency of individual Arabidopsis thaliana microRNAs
Todesco M., Balasubramanian S., Cao J., Ott F., Sureshkumar S., Schneeberger K., Meyer R. C., Altmann T. and Weigel D.
Curr Biol
(2012),
22(2) 166-70.

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20.
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On epigenetics and epistasis: hybrids and their non-additive interactions
Smith L. M. and Weigel D.
EMBO J
(2012),
31(2) 249-50.

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19.
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The recombination landscape in Arabidopsis thaliana F2 populations
Salome P. A., Bomblies K., Fitz J., Laitinen R. A., Warthmann N., Yant L. and Weigel D.
Heredity (Edinb)
(2012),
108(4) 447-55.

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18.
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Developmental genetics and new sequencing technologies: the rise of nonmodel organisms
Rowan B. A., Weigel D. and Koenig D.
Dev Cell
(2011),
21(1) 65-76.

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17.
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Evolution of the S-locus region in Arabidopsis relatives
Guo Y. L., Zhao X., Lanz C. and Weigel D.
Plant Physiol
(2011),
157(2) 937-46.

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16.
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Genetic architecture of flowering-time variation in Arabidopsis thaliana
Salome P. A., Bomblies K., Laitinen R. A., Yant L., Mott R. and Weigel D.
Genetics
(2011),
188(2) 421-33.

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15.
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Genome-wide comparison of nucleotide-binding site-leucine-rich repeat-encoding genes in Arabidopsis
Guo Y. L., Fitz J., Schneeberger K., Ossowski S., Cao J. and Weigel D.
Plant Physiol
(2011),
157(2) 757-69.

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14.
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Spontaneous epigenetic variation in the Arabidopsis thaliana methylome
Becker C., Hagmann J., Muller J., Koenig D., Stegle O., Borgwardt K. and Weigel D.
Nature
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13.
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The Arabidopsis lyrata genome sequence and the basis of rapid genome size change
Hu T. T., Pattyn P., Bakker E. G., Cao J., Cheng J. F., Clark R. M., Fahlgren N., Fawcett J. A., Grimwood J., Gundlach H., Haberer G., Hollister J. D., Ossowski S., Ottilar R. P., Salamov A. A., Schneeberger K., Spannagl M., Wang X., Yang L., Nasrallah M. E., Bergelson J., Carrington J. C., Gaut B. S., Schmutz J., Mayer K. F., Van de Peer Y., Grigoriev I. V., Nordborg M., Weigel D. and Guo Y. L.
Nat Genet
(2011),
43(5) 476-81.

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12.
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Whole-genome sequencing of multiple Arabidopsis thaliana populations
Cao J., Schneeberger K., Ossowski S., Gunther T., Bender S., Fitz J., Koenig D., Lanz C., Stegle O., Lippert C., Wang X., Ott F., Muller J., Alonso-Blanco C., Borgwardt K., Schmid K. J. and Weigel D.
Nat Genet
(2011),
43(10) 956-63.

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11.
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Arabidopsis and relatives as models for the study of genetic and genomic incompatibilities
Bomblies K. and Weigel D.
Philos Trans R Soc Lond B Biol Sci
(2010),
365(1547) 1815-23.

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10.
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Identification of a spontaneous frame shift mutation in a nonreference Arabidopsis accession using whole genome sequencing
Laitinen R. A., Schneeberger K., Jelly N. S., Ossowski S. and Weigel D.
Plant Physiol
(2010),
153(2) 652-4.

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9.
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Local-scale patterns of genetic variability, outcrossing, and spatial structure in natural stands of Arabidopsis thaliana
Bomblies K., Yant L., Laitinen R. A., Kim S. T., Hollister J. D., Warthmann N., Fitz J. and Weigel D.
PLoS Genet
(2010),
6(3) e1000890.

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8.
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The rate and molecular spectrum of spontaneous mutations in Arabidopsis thaliana
Ossowski S., Schneeberger K., Lucas-Lledo J. I., Warthmann N., Clark R. M., Shaw R. G., Weigel D. and Lynch M.
Science
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327(5961) 92-4.

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7.
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A genetic defect caused by a triplet repeat expansion in Arabidopsis thaliana
Sureshkumar S., Todesco M., Schneeberger K., Harilal R., Balasubramanian S. and Weigel D.
Science
(2009),
323(5917) 1060-3.

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6.
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Genetic linkage map of the guppy, Poecilia reticulata, and quantitative trait loci analysis of male size and colour variation
Tripathi N., Hoffmann M., Willing E. M., Lanz C., Weigel D. and Dreyer C.
Proc Biol Sci
(2009),
276(1665) 2195-208.

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5.
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Linkage analysis reveals the independent origin of Poeciliid sex chromosomes and a case of atypical sex inheritance in the guppy (Poecilia reticulata)
Tripathi N., Hoffmann M., Weigel D. and Dreyer C.
Genetics
(2009),
182(1) 365-74.

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4.
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QTL mapping in new Arabidopsis thaliana advanced intercross-recombinant inbred lines
Balasubramanian S., Schwartz C., Singh A., Warthmann N., Kim M. C., Maloof J. N., Loudet O., Trainer G. T., Dabi T., Borevitz J. O., Chory J. and Weigel D.
PLoS One
(2009),
4(2) e4318.

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3.
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Recent speciation of Capsella rubella from Capsella grandiflora, associated with loss of self-incompatibility and an extreme bottleneck
Guo Y. L., Bechsgaard J. S., Slotte T., Neuffer B., Lascoux M., Weigel D. and Schierup M. H.
Proc Natl Acad Sci U S A
(2009),
106(13) 5246-51.

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2.
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Comparative analysis of the MIR319a microRNA locus in Arabidopsis and related Brassicaceae
Warthmann N., Das S., Lanz C. and Weigel D.
Mol Biol Evol
(2008),
25(5) 892-902.

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1.
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Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana
Clark R. M., Schweikert G., Toomajian C., Ossowski S., Zeller G., Shinn P., Warthmann N., Hu T. T., Fu G., Hinds D. A., Chen H., Frazer K. A., Huson D. H., Scholkopf B., Nordborg M., Ratsch G., Ecker J. R. and Weigel D.
Science
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317(5836) 338-42.

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