Phenotype-first approaches for the identification of natural variants with potential roles in adaptation continue to be an important part of our research. Arabidopsis thaliana can be found in very different habitats, and the species varies in many morphological, physiological and life history traits. Several are likely to be important for local adaptation, such as the onset of flowering. This is less obvious for others, but their investigation can nevertheless lead to interesting biology. For example, while studying a temperature-dependent growth defect, we discovered the first example of a naturally occurring genetic defect associated with a triplet repeat expansion outside humans. Similarly, from the study of leaf morphology differences we found examples of natural variation in the efficiency of miRNA processing. An essential resource for theses studies is the genome information and germplasm made available through the 1001 Genomes Project.
Phenotypic and molecular analyses addressing the spread of (epi)mutations in populations and ultimately the mechanisms of adaptation range from field experiments in different ecological settings and controlled growth studies using thousands of small raspberry-pi controlled cameras to large-scale expression and methylome profiling. A new direction is the systematic analysis of gene x genotype interactions, where we investigate how the expression of mutant phenotypes is modulated by genetic background. The experimental strategy employs the CRISPR/Cas9 technology to knock out the same genes in different natural accessions. These efforts are an important step toward exploiting naturally occurring genetic variation for a systems understanding of biological processes. We are also systematically sampling local plant populations, both around Tübingen and in North America, where many individuals belong to a single lineage that has diversified for about 300 years.
Systematic analysis of
gene-by-genotype (GxG) interactions
Naturally occurring
segregation distortion
Evolution of
herbicide resistance
Collaboration Partners
ETH Basel, Switzerland
University of Maryland, USA
Clemson University, USA
Stanford University, USA
University of Illinois, USA
University of Toronto, Canada
Selected References
Hyperosmotic stress memory in Arabidopsis is mediated by distinct epigenetically labile sites in the genome and is restricted in the male germline by DNA glycosylase activity
Elife (2016), 5.
Epigenome confrontation triggers immediate reprogramming of DNA methylation and transposon silencing in Arabidopsis thaliana F1 epihybrids
Proc Natl Acad Sci U S A (2016), 113(14) 2083-92.
Cooperation and Conflict in the Plant Immune System
PLoS Pathog (2016), 12(3) e1005452.
Future plan(t)s
First Topic
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Second Topic
Short outline of the topic. Lorem ipsum dolor sit amet, consetetur sadipscing elitr, sed diam nonumy eirmod tempor invidunt ut labore et dolore magna aliquyam erat, sed diam voluptua. At vero eos et accusam et justo duo dolores et ea rebum. Stet clita kasd gubergren, no sea takimata sanctus est Lorem ipsum dolor sit amet. Lorem ipsum dolor sit amet, consetetur sadipscing elitr, sed diam nonumy eirmod tempor invidunt ut labore et dolore magna aliquyam erat, sed diam voluptua. At vero eos et accusam et justo duo dolores et ea rebum. Stet clita kasd gubergren, no sea takimata sanctus est Lorem ipsum dolor sit amet.
Short outline of the topic. Lorem ipsum dolor sit amet, consetetur sadipscing elitr, sed diam nonumy eirmod tempor invidunt ut labore et dolore magna aliquyam erat, sed diam voluptua. At vero eos et accusam et justo duo dolores et ea rebum. Stet clita kasd gubergren, no sea takimata sanctus est Lorem ipsum dolor sit amet. Lorem ipsum dolor sit amet, consetetur sadipscing elitr, sed diam nonumy eirmod tempor invidunt ut labore et dolore magna aliquyam erat, sed diam voluptua. At vero eos et accusam et justo duo dolores et ea rebum. Stet clita kasd gubergren, no sea takimata sanctus est Lorem ipsum dolor sit amet.